Edit Package bandage



Bandage is a program for visualising de novo assembly graphs. By displaying connections which are not present in the contigs file, Bandage opens up new possibilities for analysing de novo assemblies.
Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.
De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.

Source Files
Filename Size Changed
Bandage-0.9.0.tar.gz 0004800556 4.58 MB 3 months
bandage.changes 0000001578 1.54 KB 3 months
bandage.desktop 0000000191 191 Bytes 8 months
bandage.png 0000176976 173 KB 9 months
bandage.spec 0000002521 2.46 KB 3 months
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