C library for high-throughput sequencing data formats

Edit Package libhts

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools.

HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This project also includes the popular tabix indexer, which indexes both .tbi and .csi formats, and the bgzip compression utility.

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Source Files (show unmerged sources)
Filename Size Changed
CVE-2020-36403.diff 0000001366 1.33 KB
baselibs.conf 0000000098 98 Bytes
htslib-1.10.2.tar.bz2 0001306320 1.25 MB
libhts.changes 0000011602 11.3 KB
libhts.spec 0000005984 5.84 KB
Latest Revision
Maintenance Automation's avatar Maintenance Automation (maintenance-robot) accepted request 912629 from Maintenance Automation's avatar Maintenance Automation (maintenance-robot) (revision 1)
Set link to libhts.16823 via maintenance_release request
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