C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools.

HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This project also includes the popular tabix indexer, which indexes both .tbi and .csi formats, and the bgzip compression utility.

Source Files
Filename Size Changed
baselibs.conf 0000000098 98 Bytes about 1 year
htslib-1.10.2.tar.bz2 0001306320 1.25 MB about 1 year
libhts.changes 0000011401 11.1 KB about 1 year
libhts.spec 0000005936 5.8 KB about 1 year
Comments for libhts 0
openSUSE Build Service is sponsored by