File R-gap.spec of Package R-gap

#
# spec file for package gap
# This file is (mostly) auto-generated using information
# in the package source, esp. Description and Summary.
# Improvements in that area should be discussed with upstream.
#
# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via http://bugs.opensuse.org/
#

%global packname  gap
%global rlibdir   %{_libdir}/R/library

Name:           R-%{packname}
Version:        1.1.22
Release:        0
Summary:        Genetic Analysis Package
Group:          Development/Libraries/Other
License:        GPL (>= 2)
URL:            http://cran.r-project.org/web/packages/%{packname}
Source:         http://cran.r-project.org/src/contrib/%{packname}_1.1-22.tar.gz
BuildRoot:      %{_tmppath}/%{name}-%{version}-build
Requires:       R-base



BuildRequires:  texlive
BuildRequires:  texinfo
BuildRequires:  fdupes
BuildRequires:  R-base-devel


BuildRequires:       gcc gcc-c++ gcc-fortran 

%description
It is designed as an integrated package for genetic data analysis of both
population and family data. Currently, it contains functions for sample
size calculations of both population-based and family-based designs,
probability of familial disease aggregation, kinship calculation,
statistics in linkage analysis, and association analysis involving genetic
markers including haplotype analysis with or without environmental

%prep
%setup -q -c -n %{packname}

%build

%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# Fix many executable bits
chmod -x %{buildroot}%{rlibdir}/%{packname}/INDEX
chmod -x %{buildroot}%{rlibdir}/%{packname}/CITATION
chmod -x %{buildroot}%{rlibdir}/%{packname}/doc/*
chmod -x %{buildroot}%{rlibdir}/%{packname}/tests/README.txt
chmod -x %{buildroot}%{rlibdir}/%{packname}/tests/*/*


%files
%defattr(-, root, root, -)
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/gap/CITATION
%doc %{rlibdir}/gap/doc
%doc %{rlibdir}/gap/html
%{rlibdir}/gap/help
%{rlibdir}/gap/R
%{rlibdir}/gap/demo
%{rlibdir}/gap/data
%{rlibdir}/gap/INDEX
%{rlibdir}/gap/tests
%{rlibdir}/gap/NAMESPACE
%{rlibdir}/gap/Meta
%{rlibdir}/gap/libs
%{rlibdir}/gap/DESCRIPTION

%changelog