Sign Up
Log In
Log In
or
Sign Up
Places
All Projects
Status Monitor
Collapse sidebar
home:Tomcat42
perl-BioPerl
perl-BioPerl.changes
Overview
Repositories
Revisions
Requests
Users
Attributes
Meta
File perl-BioPerl.changes of Package perl-BioPerl
------------------------------------------------------------------- Thu Feb 4 03:08:07 UTC 2021 - Tina Müller <timueller+perl@suse.de> - updated to 1.7.8 see /usr/share/doc/packages/perl-BioPerl/Changes 1.7.8 2021-02-02 23:02:18-06:00 America/Chicago * Bio::SeqIO::interpro has been moved to a separate repository to deal with issues with XML::DOM::XPath bitrot [#347] * Pull requests: * Adjust Swiss-Prot FT A..B lines [#348] from @smoe * Update %FTQUAL_NO_QUOTE: List of qualifiers without quote [#339] from @hdevillers ------------------------------------------------------------------- Sun Dec 8 03:12:41 UTC 2019 - <timueller+perl@suse.de> - updated to 1.7.7 see /usr/share/doc/packages/perl-BioPerl/Changes 1.7.7 2019-12-07 13:41:36-06:00 America/Chicago * The program bp_chaos_plot has been removed. * GD is now no longer a dependency, suggestion or requirement. * #321 - GenBank format fix for un-quoted features, text wrapping * Bio::DB::Query::WebQuery now includes methods for delay(), delay_policy(), and a 'private' _sleep() function that mirror those from Bio::DB::WebDBSeqI, primarily for compliance with potential website restrictions for the number and frequency of queries (e.g. NCBI eUtils). * Fix bug #329, related to Bio::Tree::Statistics::transfer_bootstrap_expectation in last release. ------------------------------------------------------------------- Wed Sep 18 09:48:31 UTC 2019 - <timueller+perl@suse.de> - Add build dependency Gd - Remove deps.patch (not used anymore) ------------------------------------------------------------------- Wed Sep 18 09:35:33 UTC 2019 - <timueller+perl@suse.de> - updated to 1.7.6 see /usr/share/doc/packages/perl-BioPerl/Changes 1.7.6 2019-08-28 12:37:01+01:00 Europe/London * The program bp_classify_hits_kingdom has been removed and is now part of the examples documentation instead. * GD is now listed as a suggestion instead of a requirement. The bp_chaos_plot program will now work with the GD module. * New method Bio::Tree::Statistics::transfer_bootstrap_expectation to compute Transfer Bootstrap Expectation (TBE) for internal nodes based on the methods outlined in Lemoine et al, Nature, 2018. * New method Bio::SeqIO::fasta::next_seq_fast to retrieve next sequence in the stream faster but not perfect. ------------------------------------------------------------------- Wed Apr 3 06:45:03 UTC 2019 - Stephan Kulow <coolo@suse.com> - updated to 1.7.5 see /usr/share/doc/packages/perl-BioPerl/Changes ------------------------------------------------------------------- Thu Sep 27 16:11:06 UTC 2018 - Christian Wittmer <chris@computersalat.de> - fix for boo#1089992 * nothing provides /usr/local/bin/perl - fix license - fix wrong end of line encoding (dos) ------------------------------------------------------------------- Wed Feb 7 16:10:23 UTC 2018 - coolo@suse.com - updated to 1.007002 see /usr/share/doc/packages/perl-BioPerl/Changes ------------------------------------------------------------------- Thu Jul 26 13:25:33 UTC 2012 - chris@computersalat.de - update to 1.6.901 - [Notes] * Use of AcePerl is deprecated; Ace.pm isn't actively maintained, and modules using Ace will also be deprecated [lds, cjfields] * Minor bug fix release * Bio::SeqIO::gbxml tests require XML::SAX [hartzell] * Address Build.PL issues when DBI is not present [hartzell] * Skip gbxml.t and Interpro tests when modules not installed [cjfields] * Remove deprecated code for perl 5.14.0 compat [cjfields] * Due to schema changes and lack of support for older versions, support for NeXML 0.9 is only (very) partially implemented. See: https://redmine.open-bio.org/issues/3207 - [Bug fixes] * [3205] - small fix to Bio::Perl blast_sequence() to make compliant with docs [genehack, cjfields] * $VERSION for CPAN/cpanm-based installs was broken; force setting of module version from dist_version (probably not the best way to do this, but it seems to work) [rbuels, cjfields] - update to 1.6.900 April 14, 2011 - [Notes] * This will probably be the last release to add significant features to core modules; subsequent releases will be for bug fixes alone. We are planning on a restructuring of core for summer 2011, potentially as part of the Google Summer of Code. This may become BioPerl 2.0. * Version bump represents 'just prior to v 1.7'. We may have point releases to deal with bugs, with increments of 1.6.901, 1.6.902, etc. This code essentially is what is on the github master branch. - [New features] * Core code updated for perl 5.12.x [cjfields, Charle Tilford] * Bio::Tree refactor - major overhaul of Bio::Tree code by Greg Jordan, fixes several bugs - removal of Scalar::Util::weaken code, which was causing odd headaches with premature GC, memory leaks with perl 5.10.0, etc [cjfields] * Bio::DB::SeqFeature bug fixes for GBrowse2 compatibility [lds, scottcain, many others] * Bio::SeqIO::msout, Bio::SeqIO::mbsout - parsers for ms and mbs [Warren Kretzschmar] * Bio::SeqIO::gbxml - bug 2515 - new contribution [Ryan Golhar, jhannah] * Bio::Assembly::IO - support for reading Maq, Sam and Bowtie files [maj] - support for reading 454 GS Assembler (Newbler) ACE files [fangly] - bug 2483: support for writing ACE files [Joshua Udall, fangly] - bug 2599: support DBLINK annotation in GenBank files [cjfields] - bug 2726: reading/writing granularity: whole scaffold or one contig at a time [Joshua Udall, fangly] * Bio::OntologyIO - Added parsing of xrefs to OBO files, which are stored as secondary dbxrefs of the cvterm [Naama Menda] - General Interpro-related code refactors [dukeleto, rbuels, cjfields] * PAML code updated to work with PAML 4.4d [DaveMessina] - [Bug fixes] * [3198] - sort tabular BLAST hits by score [DaveMessina] * a lot of BUG fixes, please see Changes file for more info - remove obsolete Build patch - remove Authors from description - add deps patch and send upstream ------------------------------------------------------------------- Wed Dec 1 13:30:46 UTC 2010 - coolo@novell.com - switch to perl_requires macro ------------------------------------------------------------------- Mon Aug 16 15:02:25 UTC 2010 - chris@computersalat.de - enabled some more optional tests o Algorithm::Munkres, Convert::Binary::C, GraphViz, PostScript::TextBlock, Spreadsheet::ParseExcel ------------------------------------------------------------------- Wed Aug 4 16:11:26 UTC 2010 - chris@computersalat.de - add Build patch o do not try to connect CPAN ;) - added recommended pkgs o + BuildRequires (recommended) --with test ------------------------------------------------------------------- Mon Aug 2 21:13:45 UTC 2010 - chris@computersalat.de - initial package 1.6.1 * created by cpanspec 1.78
Locations
Projects
Search
Status Monitor
Help
OpenBuildService.org
Documentation
API Documentation
Code of Conduct
Contact
Support
@OBShq
Terms
openSUSE Build Service is sponsored by
The Open Build Service is an
openSUSE project
.
Sign Up
Log In
Places
Places
All Projects
Status Monitor
