Revisions of perl-BioPerl

Dirk Stoecker's avatar Dirk Stoecker (dstoecker) accepted request 870477 from Tina Müller's avatar Tina Müller (tinita) (revision 10)
- updated to 1.7.8
   see /usr/share/doc/packages/perl-BioPerl/Changes
  1.7.8     2021-02-02 23:02:18-06:00 America/Chicago
      * Bio::SeqIO::interpro has been moved to a separate repository to
        deal with issues with XML::DOM::XPath bitrot [#347]
      * Pull requests:
        * Adjust Swiss-Prot FT A..B lines [#348] from @smoe
        * Update %FTQUAL_NO_QUOTE: List of qualifiers without quote [#339] from
          @hdevillers
Lars Vogdt's avatar Lars Vogdt (lrupp) accepted request 755080 from Tina Müller's avatar Tina Müller (tinita) (revision 9)
- updated to 1.7.7
   see /usr/share/doc/packages/perl-BioPerl/Changes
  1.7.7     2019-12-07 13:41:36-06:00 America/Chicago
  
      * The program bp_chaos_plot has been removed.
  
      * GD is now no longer a dependency, suggestion or requirement.
  
      * #321 - GenBank format fix for un-quoted features, text wrapping
  
      * Bio::DB::Query::WebQuery now includes methods for delay(), delay_policy(),
        and a 'private' _sleep() function that mirror those from
        Bio::DB::WebDBSeqI, primarily for compliance with potential website
        restrictions for the number and frequency of queries (e.g. NCBI eUtils).
        
      * Fix bug #329, related to Bio::Tree::Statistics::transfer_bootstrap_expectation
        in last release.
Tina Müller's avatar Tina Müller (tinita) accepted request 731701 from Tina Müller's avatar Tina Müller (tinita) (revision 8)
- Add build dependency Gd
- Remove deps.patch (not used anymore)
- updated to 1.7.6
   see /usr/share/doc/packages/perl-BioPerl/Changes
  1.7.6     2019-08-28 12:37:01+01:00 Europe/London
  
      * The program bp_classify_hits_kingdom has been removed and is
        now part of the examples documentation instead.
  
      * GD is now listed as a suggestion instead of a requirement.  The
        bp_chaos_plot program will now work with the GD module.
  
      * New method Bio::Tree::Statistics::transfer_bootstrap_expectation
        to compute Transfer Bootstrap Expectation (TBE) for internal
        nodes based on the methods outlined in Lemoine et al, Nature,
        2018.
  
      * New method Bio::SeqIO::fasta::next_seq_fast to retrieve next
        sequence in the stream faster but not perfect.
Stephan Kulow's avatar Stephan Kulow (coolo) accepted request 690979 from Stephan Kulow's avatar Stephan Kulow (coolo) (revision 7)
automatic update
Christian Wittmer's avatar Christian Wittmer (computersalat) accepted request 638824 from Christian Wittmer's avatar Christian Wittmer (computersalat) (revision 6)
fix for boo#1089992, nothing provides /usr/local/bin/perl
Stephan Barth's avatar Stephan Barth (cyberiad) accepted request 573787 from Stephan Kulow's avatar Stephan Kulow (coolo) (revision 5)
automatic update
Stephan Kulow's avatar Stephan Kulow (coolo) committed (revision 3)
always buildrequire perl-macros if not present, move %perl_requires behind buildroot (script commit)
Stephan Kulow's avatar Stephan Kulow (coolo) committed (revision 2)
siwtch to perl_requires macro
Christian Wittmer's avatar Christian Wittmer (computersalat) accepted request 45939 from Christian Wittmer's avatar Christian Wittmer (computersalat) (revision 1)
Copy from home:computersalat:devel:perl/perl-BioPerl via accept of submit request 45939 revision 3.
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