Revisions of perl-BioPerl
Dirk Stoecker (dstoecker)
accepted
request 870477
from
Tina Müller (tinita)
(revision 10)
- updated to 1.7.8 see /usr/share/doc/packages/perl-BioPerl/Changes 1.7.8 2021-02-02 23:02:18-06:00 America/Chicago * Bio::SeqIO::interpro has been moved to a separate repository to deal with issues with XML::DOM::XPath bitrot [#347] * Pull requests: * Adjust Swiss-Prot FT A..B lines [#348] from @smoe * Update %FTQUAL_NO_QUOTE: List of qualifiers without quote [#339] from @hdevillers
Lars Vogdt (lrupp)
accepted
request 755080
from
Tina Müller (tinita)
(revision 9)
- updated to 1.7.7 see /usr/share/doc/packages/perl-BioPerl/Changes 1.7.7 2019-12-07 13:41:36-06:00 America/Chicago * The program bp_chaos_plot has been removed. * GD is now no longer a dependency, suggestion or requirement. * #321 - GenBank format fix for un-quoted features, text wrapping * Bio::DB::Query::WebQuery now includes methods for delay(), delay_policy(), and a 'private' _sleep() function that mirror those from Bio::DB::WebDBSeqI, primarily for compliance with potential website restrictions for the number and frequency of queries (e.g. NCBI eUtils). * Fix bug #329, related to Bio::Tree::Statistics::transfer_bootstrap_expectation in last release.
Tina Müller (tinita)
accepted
request 731701
from
Tina Müller (tinita)
(revision 8)
- Add build dependency Gd - Remove deps.patch (not used anymore) - updated to 1.7.6 see /usr/share/doc/packages/perl-BioPerl/Changes 1.7.6 2019-08-28 12:37:01+01:00 Europe/London * The program bp_classify_hits_kingdom has been removed and is now part of the examples documentation instead. * GD is now listed as a suggestion instead of a requirement. The bp_chaos_plot program will now work with the GD module. * New method Bio::Tree::Statistics::transfer_bootstrap_expectation to compute Transfer Bootstrap Expectation (TBE) for internal nodes based on the methods outlined in Lemoine et al, Nature, 2018. * New method Bio::SeqIO::fasta::next_seq_fast to retrieve next sequence in the stream faster but not perfect.
Stephan Kulow (coolo)
accepted
request 690979
from
Stephan Kulow (coolo)
(revision 7)
automatic update
Christian Wittmer (computersalat)
accepted
request 638824
from
Christian Wittmer (computersalat)
(revision 6)
fix for boo#1089992, nothing provides /usr/local/bin/perl
Stephan Barth (cyberiad)
accepted
request 573787
from
Stephan Kulow (coolo)
(revision 5)
automatic update
Christian Wittmer (computersalat)
accepted
request 129021
from
Christian Wittmer (computersalat)
(revision 4)
update to 1.6.901
Stephan Kulow (coolo)
committed
(revision 3)
always buildrequire perl-macros if not present, move %perl_requires behind buildroot (script commit)
Stephan Kulow (coolo)
committed
(revision 2)
siwtch to perl_requires macro
Christian Wittmer (computersalat)
accepted
request 45939
from
Christian Wittmer (computersalat)
(revision 1)
Copy from home:computersalat:devel:perl/perl-BioPerl via accept of submit request 45939 revision 3. Request was accepted with message: self accept
Displaying all 10 revisions