Sign Up
Log In
Log In
or
Sign Up
Places
All Projects
Status Monitor
Collapse sidebar
home:Tomcat42
perl-BioPerl
perl-BioPerl.spec
Overview
Repositories
Revisions
Requests
Users
Attributes
Meta
File perl-BioPerl.spec of Package perl-BioPerl
# # spec file for package perl-BioPerl # # Copyright (c) 2021 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via https://bugs.opensuse.org/ # %define cpan_name BioPerl Name: perl-BioPerl Version: 1.7.8 Release: 0 Summary: Perl modules for biology License: Artistic-1.0 OR GPL-1.0-or-later URL: https://metacpan.org/release/%{cpan_name} Source0: https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/%{cpan_name}-%{version}.tar.gz Source1: cpanspec.yml BuildArch: noarch BuildRequires: perl BuildRequires: perl-macros BuildRequires: perl(Data::Stag) BuildRequires: perl(Error) BuildRequires: perl(Graph::Directed) BuildRequires: perl(HTTP::Request::Common) BuildRequires: perl(HTTP::Response) BuildRequires: perl(IO::Scalar) BuildRequires: perl(IO::String) BuildRequires: perl(IPC::Run) BuildRequires: perl(LWP::UserAgent) BuildRequires: perl(List::MoreUtils) BuildRequires: perl(Module::Build) BuildRequires: perl(Set::Scalar) BuildRequires: perl(Test::Memory::Cycle) BuildRequires: perl(Test::Most) BuildRequires: perl(Test::RequiresInternet) BuildRequires: perl(Test::Weaken) BuildRequires: perl(URI) BuildRequires: perl(XML::DOM) BuildRequires: perl(XML::LibXML) BuildRequires: perl(XML::LibXML::Reader) BuildRequires: perl(XML::Parser::PerlSAX) BuildRequires: perl(XML::SAX) BuildRequires: perl(XML::SAX::Base) BuildRequires: perl(XML::SAX::Writer) BuildRequires: perl(XML::Twig) BuildRequires: perl(XML::Writer) BuildRequires: perl(YAML) BuildRequires: perl(parent) BuildRequires: perl(version) Requires: perl(Data::Stag) Requires: perl(Error) Requires: perl(Graph::Directed) Requires: perl(HTTP::Request::Common) Requires: perl(HTTP::Response) Requires: perl(IO::Scalar) Requires: perl(IO::String) Requires: perl(IPC::Run) Requires: perl(LWP::UserAgent) Requires: perl(List::MoreUtils) Requires: perl(Module::Build) Requires: perl(Set::Scalar) Requires: perl(Test::Most) Requires: perl(Test::RequiresInternet) Requires: perl(URI) Requires: perl(XML::DOM) Requires: perl(XML::LibXML) Requires: perl(XML::LibXML::Reader) Requires: perl(XML::Parser::PerlSAX) Requires: perl(XML::SAX) Requires: perl(XML::SAX::Base) Requires: perl(XML::SAX::Writer) Requires: perl(XML::Twig) Requires: perl(XML::Writer) Requires: perl(YAML) Requires: perl(parent) Requires: perl(version) %{perl_requires} # MANUAL BEGIN BuildRequires: perl(GD) # MANUAL END %description BioPerl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. These objects not only do what they are advertised to do in the documentation, but they also interact - Alignment objects are made from the Sequence objects, Sequence objects have access to Annotation and SeqFeature objects and databases, Blast objects can be converted to Alignment objects, and so on. This means that the objects provide a coordinated and extensible framework to do computational biology. BioPerl development focuses on Perl classes, or code that is used to create objects representing biological entities. There are scripts provided in the scripts/ and examples/ directories but scripts are not the main focus of the BioPerl developers. Of course, as the objects do most of the hard work for you, all you have to do is combine a number of objects together sensibly to make useful scripts. The intent of the BioPerl development effort is to make reusable tools that aid people in creating their own sites or job-specific applications. The BioPerl website at http://bioperl.org also attempts to maintain links and archives of standalone bio-related Perl tools that are not affiliated or related to the core BioPerl effort. Check the site for useful code ideas and contribute your own if possible. %prep %autosetup -n %{cpan_name}-%{version} find . -type f ! -path "*/t/*" ! -name "*.pl" ! -path "*/bin/*" ! -path "*/script/*" ! -name "configure" -print0 | xargs -0 chmod 644 %build perl Makefile.PL INSTALLDIRS=vendor %make_build %check make test %install %perl_make_install %perl_process_packlist %perl_gen_filelist %files -f %{name}.files %doc AUTHORS Changes examples HACKING.md README.md %license LICENSE %changelog
Locations
Projects
Search
Status Monitor
Help
OpenBuildService.org
Documentation
API Documentation
Code of Conduct
Contact
Support
@OBShq
Terms
openSUSE Build Service is sponsored by
The Open Build Service is an
openSUSE project
.
Sign Up
Log In
Places
Places
All Projects
Status Monitor