File ugene.spec of Package UGENE

#
# spec file for package ugene
#
# Copyright (c) 2024 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#


Name:           ugene
Version:        49.1
Release:        0
Summary:        Integrated bioinformatics toolkit
#The entire source code is GPL-2.0+ except some plugins that are licensed differently
License:        GPL-2.0-or-later AND LGPL-2.1-or-later AND MIT AND ISC AND BSD-3-Clause AND SUSE-Public-Domain AND SUSE-NonFree
Group:          Productivity/Scientific/Other
URL:            http://ugene.net
Source0:        https://github.com/ugeneunipro/ugene/archive/refs/tags/%{version}.tar.gz#/%{name}-%{version}.tar.gz
Source100:      %{name}-rpmlintrc
BuildRequires:  desktop-file-utils
BuildRequires:  fdupes
BuildRequires:  glu-devel
BuildRequires:  hicolor-icon-theme
BuildRequires:  procps-devel
BuildRequires:  update-desktop-files
BuildRequires:  zlib-devel >= 1.2.8
BuildRequires:  libqt5-linguist >= 5.15
BuildRequires:  libqt5-qtbase-devel >= 5.15
BuildRequires:  libqt5-qtscript-devel >= 5.15
BuildRequires:  libqt5-qtsvg-devel >= 5.15
BuildRequires:  libqt5-qtwebsockets-devel >= 5.15
BuildRequires:  libXtst-devel
# x86 broken: https://github.com/ugeneunipro/ugene/issues/780
# aarch64 fails due to GLES
ExclusiveArch:  x86_64

%description
Unipro UGENE is a cross-platform visual environment for DNA and protein
sequence analysis. UGENE integrates the most important bioinformatics
computational algorithms and provides an easy-to-use GUI for performing
complex analysis of the genomic data. One of the main features of UGENE
is a designer for custom bioinformatics workflows.

%prep
%autosetup -p1 -N

%build
%{qmake5} . -r PREFIX=%{_libdir}/ugene
%make_jobs
# qmake project files are broken, see https://github.com/ugeneunipro/ugene/issues/683
%{qmake5} . -r PREFIX=%{_libdir}/ugene
%make_jobs

%install
%{qmake5_install}

# Clean up unnecessary files
find %{buildroot}/%{_libdir} -iname lib\*.a -ls -delete
rm %{buildroot}/%{_libdir}/ugene/*.xpm
rm %{buildroot}/%{_libdir}/ugene/ugene

for dir in %{_datadir}/applications %{_mandir}/man1 %{_bindir} \
           %{_datadir}/icons/hicolor/32x32/mimetypes \
           %{_datadir}/icons/hicolor/48x48/apps \
           %{_datadir}/mime/packages
do
  mkdir -p %{buildroot}${dir}
done
mv %{buildroot}/%{_libdir}/ugene/*desktop %{buildroot}%{_datadir}/applications/
mv %{buildroot}/%{_libdir}/ugene/*.1.* %{buildroot}%{_mandir}/man1/
mv %{buildroot}/%{_libdir}/ugene/application*.png %{buildroot}%{_datadir}/icons/hicolor/32x32/mimetypes/
mv %{buildroot}/%{_libdir}/ugene/ugene*.png %{buildroot}%{_datadir}/icons/hicolor/48x48/apps/
mv %{buildroot}/%{_libdir}/ugene/application*.xml %{buildroot}%{_datadir}/mime/packages/

for f in ugenem ugeneui ugenecl ; do
    ln -s %{_libdir}/ugene/$f %{buildroot}/%{_bindir}/$f
done

%suse_update_desktop_file -r %{name} "Qt Science Chemistry"
sed -i -e '/Exec/ s/ugene -ui/ugeneui/' %{buildroot}%{_datadir}/applications/*desktop

find %{buildroot}%{_libdir}/ugene/data -type f -exec chmod -x '{}' \;

%fdupes %{buildroot}

%files
%license LICENSE.txt LICENSE.3rd_party.txt
%{_bindir}/*
%{_libdir}/%{name}
%{_datadir}/applications/*
%{_datadir}/icons/hicolor/*/apps/*.png
%{_datadir}/icons/hicolor/*/mimetypes/*.png
%{_datadir}/mime/packages/*
%{_mandir}/man1/*

%changelog