File clustalx.spec of Package clustalx

#
# spec file for package clustalx
#
# Copyright (c) 2010 SUSE LINUX Products GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
# norootforbuild

Name: clustalx
Summary: Multiple Sequence Alignment Program
Version: 2.1
Release: 1
License: LGPL
Group: Productivity/Scientific/Other
BuildRequires: gcc gcc-c++ make libqt4-devel >= 4.3
Source: %name-%version.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-build
URL: http://www.clustal.org/

%description
CLUSTAL W and CLUSTAL X Multiple Sequence Alignment Programs

For details and citation purposes see paper "Clustal W and Clustal X
version 2.0", Larkin M., et al. Bioinformatics 2007 23(21):2947-2948
http://bioinformatics.oxfordjournals.org/cgi/content/full/23/21/2947

%prep
%setup -q

#fix incorrect line ending
sed -i 's/\r//' clustalx.hlp

%build
qmake
make %{?_smp_mflags}

cat > clustalx2 <<'EOF'
#!/bin/sh
###########################################################################
# Version: 1.0
# Code from the clustalx installer script
# Path to the clustal installation directory
export CLU_INSTALL_DIR=%{_libdir}/clustalx
BINARY=clustalx
###########################################################################

PROG=`basename $0`

# Debugging
#echo CLU_INSTALL_DIR=$CLU_INSTALL_DIR  1>&2
#echo BINARY=$BINARY  1>&2

# Is there an executable binary file?
binary=$CLU_INSTALL_DIR/$BINARY
if [ ! -f $binary ]; then
    echo "$PROG: Can't find executable '$binary'"
    exit 1
fi
if [ ! -x $binary ]; then
    echo "$PROG: Binary '$binary' is not executable"
    exit 1
fi

# Exec the child over this one
exec $binary $*
###########################################################################
EOF

%install
mkdir -p %{buildroot}/%{_bindir}
mkdir -p %{buildroot}/%{_libdir}/%{name}
mkdir -p %{buildroot}/%{_docdir}/%{name}

install -m 644 *.xml %{buildroot}/%{_libdir}/%{name}/
install -m 755 clustalx %{buildroot}/%{_libdir}/%{name}/clustalx
install -m 755 clustalx2 %{buildroot}/%{_bindir}/clustalx2
install -m 644 clustalx.hlp %{buildroot}/%{_docdir}/%{name}/clustalx.hlp
ln -s %{_docdir}/%{name}/clustalx.hlp %{buildroot}/%{_libdir}/clustalx/clustalx.hlp

%clean
rm -rf %{buildroot}

%files
%defattr(-,root,root)
%doc COPYING COPYING.LESSER README clustalx.hlp
%{_libdir}/clustalx
%{_bindir}/clustalx2

%changelog