File dolfin.spec of Package dolfin

#
# spec file for package dolfin
#
# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#

%global flavor @BUILD_FLAVOR@%{nil}

%if 0%{?sle_version} >= 150200
%define DisOMPI1 ExclusiveArch:  do_not_build
%endif
%if !0%{?is_opensuse} && 0%{?sle_version:1} && 0%{?sle_version} < 150200
%define DisOMPI3 ExclusiveArch:  do_not_build
%endif

# Disable petsc/slepc for now, dolfin is incompatible with current petsc
%bcond_with petsc
# Disable parmetis for now, dolfin is incompatible with current parmetis
%bcond_with parmetis
# Trilinos cmake files are defect, disable for now
%bcond_with trilinos
# Bindings have been changed to pybind11, recheck
%bcond_with python

%define sname dolfin
%define lname libdolfin2019_1

%if "%flavor" == ""
%define package_name %{sname}
ExclusiveArch:  do_not_build
%endif

%if "%flavor" == "documentation"
%define package_name %{sname}-documentation
%endif

%if "%flavor" == "serial"
%define my_prefix %{_prefix}
%endif


%if "%flavor" == "openmpi4"
%define mpi_family openmpi
%define mpi_ver 4
%endif

%if "%flavor" == "openmpi5"
%define mpi_family openmpi
%define mpi_ver 5
%endif

%define mpi_ext %{?mpi_ver}

%if 0%{?mpi_family:1}
%{bcond_without mpi}
%define my_prefix %{_libdir}/mpi/gcc/%{mpi_family}%{?mpi_ext}
%else
%{bcond_with mpi}
%endif

%if 0%{!?package_name:1}
%define package_name  %{sname}%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
%endif
%define lib_name  %{lname}%{?with_mpi:-%{mpi_family}%{?mpi_ext}}

Name:           %{package_name}
Version:        2019.1.0.post0
%global main_version 2019.1.0
Release:        0
Summary:        An open source CFD software
License:        LGPL-3.0-or-later
Group:          Development/Libraries/C and C++
Url:            https://fenicsproject.org/
Source0:        https://bitbucket.org/fenics-project/%{sname}/downloads/%{sname}-%{version}.tar.gz
# PATCH-FIX-OPENSUSE
Patch0:         0001-Fix-linker-error-due-to-missing-lpthread.patch
# PATCH-FIX-OPENSUSE -- https://bitbucket.org/fenics-project/dolfin/issues/1115/compile-error-min_element-is-not-member-of
Patch1:         0001-Add-missing-algorithm-include-for-std-min_element-co.patch
# PATCH-FIX-OPENSUSE -- https://bitbucket.org/fenics-project/dolfin/issues/1116/boost-detail-endianhpp-no-longer-available
Patch2:         0001-Use-__BYTE_ORDER__-instead-of-removed-Boost-endian.h.patch
# PATCH-FIX-OPENSUSE
Patch3:         0001-Use-correct-type-for-index_to_position-value-tempora.patch

BuildRequires:  fdupes
%if "%{flavor}" != "documentation"
BuildRequires:  libboost_filesystem-devel
BuildRequires:  libboost_chrono-devel
BuildRequires:  libboost_headers-devel >= 1.56
BuildRequires:  libboost_iostreams-devel
BuildRequires:  libboost_program_options-devel
BuildRequires:  libboost_regex-devel
BuildRequires:  libboost_system-devel
BuildRequires:  libboost_timer-devel
BuildRequires:  cmake >= 3.5
BuildRequires:  cppunit-devel
BuildRequires:  eigen3-devel >= 3.2.90
BuildRequires:  gcc-c++
BuildRequires:  gmp-devel
BuildRequires:  hdf5%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
BuildRequires:  lapack-devel
BuildRequires:  libxml2-devel
BuildRequires:  hwloc-devel
BuildRequires:  pkg-config
BuildRequires:  python3-FFC = %{main_version}
BuildRequires:  python3-FIAT = %{main_version}
BuildRequires:  python3-setuptools
BuildRequires:  python3-ufl = %{main_version}
%if %{with python}
BuildRequires:  python3-pybind11
%endif
BuildRequires:  suitesparse-devel
%if %{with trilinos}
BuildRequires:  trilinos%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel >= 12.4.0
%endif
%if %{with petsc}
BuildRequires:  petsc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel >= 3.7
BuildRequires:  slepc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
%endif
%if %{with mpi}
BuildRequires:  Modules
BuildRequires:  %{mpi_family}%{?mpi_ext}-devel
BuildRequires:  ptscotch-%{mpi_family}%{?mpi_ext}-devel
%if %{with parmetis}
BuildRequires:  ptscotch-parmetis-%{mpi_family}%{?mpi_ext}-devel >= 4.0.2
%endif
#!BuildIgnore:  metis-devel
Requires:       %{mpi_family}%{?mpi_ext}
%endif
%else
BuildRequires:  doxygen
BuildRequires:  graphviz
%endif


%description
dolphin is an open source CFD software (FLOW solvER, literally)
written in C++. It is mainly devoted to the resolution of the
turbulent unsteady incompressible Navier-Stokes equations.

%package devel
Summary:        Development and header files for %{name}
Group:          Development/Libraries/C and C++
Provides:       pkgconfig(DOLFIN)
Provides:       %{name}-devel = %{main_version}
Requires:       eigen3-devel
Requires:       lapack-devel
Requires:       libboost_headers-devel
Requires:       %{lib_name} = %{version}
Requires:       libxml2-devel
%if %{with mpi}
Requires:       %{mpi_family}%{?mpi_ext}-devel
Requires:       pastix%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
Requires:       ptscotch-%{mpi_family}%{?mpi_ext}-devel
%endif
%if %{with petsc}
Requires:       petsc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
Requires:       slepc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel
%endif
Requires:       suitesparse-devel

%description devel
The %{name}-devel package contains header files for developing
applications that use %{name}.

%package -n %{lib_name}
Summary:        A package for solving large sparse systems of linear equations
Group:          System/Libraries

%description -n %{lib_name}
dolphin is an open source CFD software (FLOW solvER, literally)
written in C++. It is mainly devoted to the resolution of the
turbulent unsteady incompressible Navier-Stokes equations.

%package -n python3-dolfin_utils%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
Summary:        A package for solving large sparse systems of linear equations
Group:          Development/Languages/Python
Provides:       python3-dolfin_utils = %{main_version}
Obsoletes:      python3-dolfin_utils < %{main_version}
Provides:       python3-dolfin_utils = %{version}

%description -n python3-dolfin_utils%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
dolphin is an open source CFD software (FLOW solvER, literally)
written in C++. It is mainly devoted to the resolution of the
turbulent unsteady incompressible Navier-Stokes equations.

%package -n python3-dolfin%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
Summary:        A package for solving large sparse systems of linear equations
Group:          Development/Languages/Python
Requires:       python3-FFC = %{main_version}
Requires:       python3-FIAT = %{main_version}
Requires:       python3-sympy
Requires:       python3-dolfin_utils%{?with_mpi:-%{mpi_family}%{?mpi_ext}} = %{version}
%{?with_mpi:Requires:       python3-mpi4py}
Requires:       python3-ply
Requires:       python3-ufl = %{main_version}
Provides:       python3-dolfin = %{main_version}
Obsoletes:      python3-dolfin < %{main_version}
Provides:       python3-dolfin = %{version}

%description -n python3-dolfin%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
dolphin is an open source CFD software (FLOW solvER, literally)
written in C++. It is mainly devoted to the resolution of the
turbulent unsteady incompressible Navier-Stokes equations.

This package contains the python-dolfin module.

%package doc
Summary:        Documentation files for %{name}
Group:          Documentation/HTML
BuildArch:      noarch

%description doc
The %{name}-doc package contains documentation files for developing
applications that use %{name}.


%prep
%autosetup -p1 -n %{sname}-%{version}

%build
%if "%{flavor}" != "documentation"
%if %{with petsc}
%define petsc_ver %(rpm -q petsc%{?with_mpi:-%{mpi_family}%{?mpi_ext}}-devel --queryformat %%{VERSION})
# PETSC_DIR/SLEPC_DIR have to be set in the environment
export PETSC_DIR=%{my_prefix}/%_lib/petsc/%{petsc_ver}/linux-gnu-c-opt
export SLEPC_DIR=%{my_prefix}/%_lib/slepc/%{petsc_ver}/linux-gnu-c-opt
%endif

export PKG_CONFIG_PATH=%{my_prefix}/%_lib/pkgconfig:$PKG_CONFIG_PATH
%define hdf5bin %{?with_mpi:h5p}%{!?with_mpi:h5}

# Force usage of HDF5 1.10 API
export CXXFLAGS="-DH5_USE_110_API %optflags"

%cmake -DCMAKE_INSTALL_PREFIX=%{my_prefix} \
       -DCMAKE_EXE_LINKER_FLAGS="-L%{my_prefix}/%_lib" \
       -DDOLFIN_LIB_DIR:PATH="%_lib" \
       -DDOLFIN_PKGCONFIG_DIR:PATH="%_lib/pkgconfig" \
       -DDOLFIN_ENABLE_MPI:BOOL=%{?with_mpi:ON}%{!?with_mpi:OFF} \
       -DDOLFIN_ENABLE_PARMETIS:BOOL=%{?with_parmetis:ON}%{!?with_parmetis:OFF} \
       -DDOLFIN_ENABLE_SCOTCH:BOOL=ON \
       -DDOLFIN_ENABLE_TRILINOS:BOOL=%{?with_trilinos:ON}%{!?with_trilinos:OFF} \
       -DHDF5_C_COMPILER_EXECUTABLE=%{my_prefix}/bin/%{hdf5bin}cc \
       -DHDF5_CXX_COMPILER_EXECUTABLE=%{my_prefix}/bin/%{hdf5bin}cc \
       -DHDF5_Fortran_COMPILER_EXECUTABLE=%{my_prefix}/bin/%{hdf5bin}fc \
       -DHDF5_DIFF_EXECUTABLE=%{my_prefix}/bin/h5diff \
       -DSCOTCH_LIBRARY=%{my_prefix}/%_lib/libscotch.so \
       -DSCOTCH_INCLUDE_DIRS=%{my_prefix}/include \
       -DPTSCOTCHERR_LIBRARY=%{my_prefix}/%_lib/libptscotcherr.so \
       -DPTSCOTCH_LIBRARY=%{my_prefix}/%_lib/libptscotch.so \
       -DDOLFIN_SKIP_BUILD_TESTS:BOOL=ON \
       ..
%cmake_build
%else
(cd doc; doxygen -u && doxygen)
%endif

%install
%if "%{flavor}" != "documentation"
%cmake_install
%fdupes -s %{buildroot}%{my_prefix}/share/%{sname}
sed -i -e '1 s#/usr/bin/env python#/usr/bin/python#' %{buildroot}%{my_prefix}/bin/*

%else
mkdir -p %{buildroot}%{_docdir}/%{sname}-devel
cp -ar doc/html %{buildroot}%{_docdir}/%{sname}-devel/
%fdupes -s %{buildroot}%{_docdir}/%{sname}-devel
%endif

%check
%if %{with python} && "%{flavor}" != "documentation"
export PYTHONPATH=%{buildroot}%{my_prefix}/lib/python%{py3_ver}/site-packages:%{buildroot}%{my_prefix}/%_lib/python%{py3_ver}/site-packages
export LD_LIBRARY_PATH=%{buildroot}%{my_prefix}/%{_lib}:%{my_prefix}/%{_lib}
python3 -c "import dolfin"
%endif

%post -n %{lib_name} -p /sbin/ldconfig

%postun -n %{lib_name} -p /sbin/ldconfig

%if "%{flavor}" != "documentation"
%files
%license COPYING COPYING.LESSER
%doc AUTHORS ChangeLog.rst README.rst
%{my_prefix}/bin/*

%if %{with python}
%files -n python3-dolfin_utils%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
%if "%{my_prefix}" != "%{_prefix}"
%if "%{_lib}" != "lib"
%dir %{my_prefix}/lib
%endif
%dir %{my_prefix}/lib/python%{py3_ver}
%dir %{my_prefix}/lib/python%{py3_ver}/site-packages
%endif
%{my_prefix}/lib/python%{py3_ver}/site-packages/dolfin_utils

%files -n python3-dolfin%{?with_mpi:-%{mpi_family}%{?mpi_ext}}
%dir %{my_prefix}/%_lib/python%{py3_ver}
%dir %{my_prefix}/%_lib/python%{py3_ver}/site-packages
%{my_prefix}/%_lib/python%{py3_ver}/site-packages/dolfin
%{my_prefix}/%_lib/python%{py3_ver}/site-packages/fenics
%endif

%files -n %{lib_name}
%{my_prefix}/%_lib/*.so.*

%files devel
%if "%{my_prefix}" != "%{_prefix}"
%dir %{my_prefix}/%_lib/pkgconfig
%endif
%{my_prefix}/include/*
%{my_prefix}/%_lib/*.so
%{my_prefix}/share/%{sname}
%{my_prefix}/%_lib/pkgconfig/*.pc

%else
%files doc
%{_docdir}/%{sname}-devel
%endif

%changelog