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File libmesh.spec of Package libmesh

#
# spec file for package libmesh
#
# Copyright (c) 2022 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#

%global flavor @BUILD_FLAVOR@%{nil}

%if !0%{?is_opensuse} && 0%{?sle_version:1} && 0%{?sle_version} < 150200
%define DisOMPI4 ExclusiveArch:  do_not_build
%endif

%define sover_mesh 0
%define sover_timpi 2
%define sover_metaphysicl 7
%define mesh_version 1.6.2
%define timpi_version 1.2.1
%define metaphysicl_version 1.1.0
%define method opt

%bcond_with petsc
%bcond_without check

%if "%{flavor}" == ""
ExclusiveArch:  do_not_build
%endif

%if "%{flavor}" == "serial"
%bcond_with hpc
%endif

# this is a non-HPC build
%if "%{flavor}" == "openmpi4"
%{?DisOMPI4}
%global mpi_flavor openmpi
%define mpi_ver 4
%bcond_with hpc
%endif

%if "%{flavor}" == "openmpi5"
%{?DisOMPI5}
%global mpi_flavor openmpi
%define mpi_ver 5
%bcond_with hpc
%endif

%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}

%define mpi_ext %{?mpi_ver}

%if %{with mpi}
%global my_suffix     -%{mpi_flavor}%{?mpi_ext}
%define my_prefix     %{_libdir}/mpi/gcc/%{mpi_flavor}%{?mpi_ext}
%define my_bindir     %{my_prefix}/bin
%define my_datadir    %{my_prefix}/share
%define my_incdir     %{my_prefix}/include
%define my_libdir     %{my_prefix}/%{_lib}
%define my_sysconfdir %{my_prefix}/etc
%else
%define my_prefix     %{_prefix}
%define my_bindir     %{_bindir}
%define my_datadir    %{_datadir}
%define my_libdir     %{_libdir}
%define my_incdir     %{_includedir}
%define my_sysconfdir %{_sysconfdir}
%endif
%define libname(n:m:s:)   lib%{-n*}%{-m:_%{-m*}}%{-s*}%{?my_suffix}

Name:           libmesh%{?my_suffix}
Version:        %{mesh_version}
Release:        0
Summary:        A framework for the numerical simulation of partial differential equations
License:        LGPL-2.1-only
Group:          Development/Libraries/C and C++
URL:            https://libmesh.github.io/
Source0:        https://github.com/libMesh/libmesh/releases/download/v%{mesh_version}/libmesh-%{mesh_version}.tar.xz
Patch0:         use_system_netcdf.patch
BuildRequires:  automake
BuildRequires:  blas-devel
BuildRequires:  libboost_headers-devel >= 1.57
BuildRequires:  eigen3-devel
BuildRequires:  gcc-c++
BuildRequires:  gcc-fortran
BuildRequires:  glpk-devel
BuildRequires:  hdf5%{?my_suffix}-devel
BuildRequires:  hwloc-devel
BuildRequires:  lapack-devel
BuildRequires:  libtool
BuildRequires:  nlopt-devel
%if %{with mpi}
BuildRequires:  %{mpi_flavor}%{?mpi_ext}-devel
BuildRequires:  pastix%{my_suffix}-devel
# libmesh insists on a MPI enabled VTK version, even when configured without MPI
BuildRequires:  vtk%{my_suffix}-devel
%endif
%if %{with petsc}
BuildRequires:  petsc%{?my_suffix}-devel
%endif
BuildRequires:  pkgconfig
BuildRequires:  tbb-devel
BuildRequires:  libtirpc-devel
BuildRequires:  xz
BuildRequires:  zlib-devel
BuildRequires:  pkgconfig(netcdf)

%description
The libMesh library provides a framework for the numerical simulation of partial
differential equations using arbitrary unstructured discretizations on serial
and parallel platforms. A major goal of the library is to provide support for
adaptive mesh refinement (AMR) computations in parallel while allowing a
research scientist to focus on the physics they are modeling.

%package -n     %{libname -n mesh -m %{method} -s %{sover_mesh}}
Summary:        A framework for the numerical simulation of partial differential equations
Group:          System/Libraries

%description -n %{libname -n mesh -m %{method} -s %{sover_mesh}}
The libMesh library provides a framework for the numerical simulation of partial
differential equations.

%package -n     %{libname -n timpi -m %{method} -s %{sover_timpi}}
Summary:        Templated Interface to MPI
Group:          System/Libraries
Version:        %{timpi_version}

%description -n %{libname -n timpi -m %{method} -s %{sover_timpi}}
The libMesh library provides a framework for the numerical simulation of partial
differential equations.

This package contains the TIMPI shared library.

# TODO: libmesh allows external libmetaphysicl, split
%package -n     %{libname -n metaphysicl -s %{sover_metaphysicl}}
Summary:        Metaprogramming for numerical simulations
Group:          System/Libraries
Version:        %{metaphysicl_version}

%description -n %{libname -n metaphysicl -s %{sover_metaphysicl}}
The libMesh library provides a framework for the numerical simulation of partial
differential equations.

This package contains the metaphysicl shared library.

%package        devel
Summary:        Development files for %{name}
Group:          Development/Libraries/C and C++
Requires:       %{libname -n mesh -m %{method} -s %{sover_mesh}} = %{mesh_version}
Requires:       %{libname -n timpi -m %{method} -s %{sover_timpi}} = %{timpi_version}
Requires:       %{libname -n metaphysicl -s %{sover_metaphysicl}} = %{metaphysicl_version}

%description    devel
The %{name}-devel package contains libraries and header files for
developing applications that use %{name}.

%prep
%setup -q -n libmesh-%{mesh_version}
for d in boost eigen laspack triangle tetgen metis netcdf; do
    rm -R contrib/$d
    sed -i -e "s:AC_CONFIG_FILES.*contrib/$d.*::" m4/libmesh_optional_packages.m4
    sed -i -e "s:SUBDIRS.*\s$d.*::" contrib/Makefile.am
done
%patch0 -p1
sed -i -e "s:AC_CONFIG_FILES.*contrib/netcdf.*::" m4/netcdf.m4

%build
autoreconf --install
# Find all configure scripts and use something reproducible for the hostname/date
# ac_hostname comes from system autoconf/general.m4
find . -iname \*configure -ls -exec sed -i \
  -e '/uname -n/ s/hostname || uname -n/echo OBS/ ' \
  -e "/date +/ s/date +/date -d@$SOURCE_DATE_EPOCH +/ " \
  '{}' \;
%if %{with petsc}
export PETSC_DIR="$(echo %{my_libdir}/petsc/3.*/linux-gnu-c-opt)"
%endif
# clean up shipped *_config.h files - https://github.com/libMesh/libmesh/issues/3153
find . -iname \*_config.h -ls -delete
mkdir build; pushd build
%global _configure ../configure
%configure \
           USER=abuild \
           --enable-strict-lgpl \
	   --disable-examples \
           %{?with_petsc:--enable-petsc-required} \
           %{?with_mpi:--enable-mpi} \
           --prefix=%{my_prefix} \
           --bindir=%{my_bindir} \
           --libdir=%{my_libdir} \
           --sysconfdir=%{my_sysconfdir} \
           --disable-metis \
           --enable-netcdf=system \
           --disable-qhull \
           --disable-parmetis \
           --enable-hdf5 \
           --with-hdf5=%{my_prefix} \
           --with-methods="%{method}" \
           --with-thread-model=auto
%make_build
# Build tests without running them
%make_build check TESTS=

%install
pushd build
make DESTDIR=%{buildroot} install

# cleanup
rm %{buildroot}/%{my_libdir}/pkgconfig/Make.common
rm %{buildroot}/%{my_prefix}/Make.common
rm -Rf %{buildroot}/%{my_prefix}/contrib
rm -Rf %{buildroot}/%{_datadir}/reference_elements
rm %{buildroot}/%{_includedir}/gzstream.h
rm %{buildroot}/%{my_libdir}/*{.la,.a}
rm -Rf %{buildroot}/%{my_sysconfdir}/libmesh
%if "%{_bindir}" != "%{my_bindir}"
mv %{buildroot}%{_bindir}/* %{buildroot}%{my_bindir}
%endif
find %{buildroot}/%{my_bindir} -type f -not $ -iname \*-config -o -iname \*_version\* $ -ls -delete
# fix up *-config scripts and pkgconfig
find %{buildroot}/%{my_bindir} -type f -iname \*-config -ls -exec \
  sed -i -e 's@-L/usr/lib @@g' \
         -e 's@-Wl,-rpath,/usr/lib @@g' \
         -e '/^builddir=/ d' \
	 '{}' \;
find %{buildroot}/%{my_libdir}/pkgconfig -type f -iname \*.pc -ls -exec \
  sed -i -e 's@-L/usr/lib @@g' \
         -e 's@-Wl,-rpath,/usr/lib @@g' \
	 '{}' \;

%check
%if %{with check}
pushd build
make %{?_smp_mflags} check
%endif

%post -n %{libname -n mesh -m %{method} -s %{sover_mesh}} -p /sbin/ldconfig
%postun -n %{libname -n mesh -m %{method} -s %{sover_mesh}} -p /sbin/ldconfig
%post -n %{libname -n timpi -m %{method} -s %{sover_timpi}} -p /sbin/ldconfig
%postun -n %{libname -n timpi -m %{method} -s %{sover_timpi}} -p /sbin/ldconfig
%post -n %{libname -n metaphysicl -s %{sover_metaphysicl}} -p /sbin/ldconfig
%postun -n %{libname -n metaphysicl -s %{sover_metaphysicl}} -p /sbin/ldconfig

%files -n %{libname -n mesh -m %{method} -s %{sover_mesh}}
%{my_libdir}/libmesh*.so.*

%files -n %{libname -n timpi -m %{method} -s %{sover_timpi}}
%{my_libdir}/libtimpi*.so.*

%files -n %{libname -n metaphysicl -s %{sover_metaphysicl}}
%{my_libdir}/libmetaphysicl*.so.*

%files devel
%{my_bindir}/*-config
%{my_bindir}/*_version{,-opt}
%{my_incdir}/libmesh
%{my_incdir}/timpi
%{my_incdir}/metaphysicl
%dir %{my_datadir}/aclocal
%{my_datadir}/aclocal/*
%{my_libdir}/*.so
%{my_libdir}/pkgconfig/*.pc

%changelog

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File libmesh.spec of Package libmesh

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