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File probcons.spec of Package probcons
# # spec file for package probcons # # Copyright (c) 2010 SUSE LINUX Products GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via http://bugs.opensuse.org/ # # norootforbuild Name: probcons Summary: Multiple Alignments of Protein Sequences Version: 1.12 Release: 2 License: Public Domain Group: Productivity/Scientific/Other BuildRequires: gcc-c++ make Source: %{name}_v1_12.tar.gz Patch0: probcons-cstring.patch Patch1: probcons-1.12-fix-gcc-4.6.patch BuildRoot: %{_tmppath}/%{name}-%{version}-build URL: http://probcons.stanford.edu %description PROBCONS is a novel tool for generating multiple alignments of protein sequences. Using a combination of probabilistic modeling and consistency-based alignment techniques, PROBCONS has achieved the highest accuracies of all alignment methods to date. Citation: Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340. %prep %setup -n %{name} #missing cstring in includes %patch0 -p1 %patch1 -p1 %build make %install rm -rf %{buildroot} mkdir -p %{buildroot}/%{_bindir} #compare clashes with program the same name from ImageMagick install -m 755 compare %{buildroot}/%{_bindir}/compare-probcons install -m 755 probcons %{buildroot}/%{_bindir}/probcons install -m 755 makegnuplot %{buildroot}/%{_bindir}/makegnuplot install -m 755 project %{buildroot}/%{_bindir}/project %clean rm -rf %{buildroot} %files %defattr(-,root,root) %{_bindir}/* %doc README %changelog
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