File vcftools.spec of Package vcftools
#
# spec file for package vcftools
#
# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
Name: vcftools
Version: 0.1.16
Release: 0
Summary: Tools for manipulating VCF files (Variant Call Format)
License: GPL-3.0-only
Group: Productivity/Scientific/Other
URL: https://vcftools.github.io/
Source: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz
BuildRequires: gcc-c++
BuildRequires: perl
BuildRequires: pkgconfig
BuildRequires: zlib-devel
%description
VCFtools is a set of tools written in Perl and C++ for working with VCF files
(Variant Call Format), such as those generated by the 1000 Genomes Project.
%prep
%setup -q
chmod -x LICENSE
chmod -x README.md
%build
# Remove prefix from perl_vendorarch to set up the pmdir
perl_vendorarch_short=`echo "%{perl_vendorarch}" | sed 's:%{_prefix}/:/:'`
%configure --with-pmdir=${perl_vendorarch_short}
%make_build
%install
%make_install
# CONVERT env HASHBANGS TO USE DIRECT EXECUTABLE
perlbin=`which perl`
sed -i "1 {s:/usr/bin/env perl:${perlbin}:}" \
%{buildroot}/%{_bindir}/fill-* \
%{buildroot}/%{_bindir}/vcf-*
%files
%license LICENSE
%doc README.md
%{_bindir}/*
%{_mandir}/man1/vcftools.1%{?ext_man}
%{perl_vendorarch}/FaSlice.pm
%{perl_vendorarch}/Vcf.pm
%{perl_vendorarch}/VcfStats.pm
%changelog