File wise2.spec of Package wise2

#
# spec file for package wise2
#
# Copyright (c) 2022 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#


Name:           wise2
Summary:        Advanced Comparison of Protein Sequence to Genomic DNA Sequence
License:        GPL-2.0 and BSD-3-Clause
Group:          Productivity/Scientific/Other
Version:        2.4.1
Release:        0
Url:            https://www.ebi.ac.uk/~birney/wise2/
Source:         https://www.ebi.ac.uk/~birney/wise2/wise%{version}.tar.gz
# remove exec of welcome.csh 
Patch0:         wise2-welcome.patch
# fix sqio getline http://bugs.gentoo.org/278307
Patch1:         wise2-hmmer2-sqio.patch
# Use a default for the configdir in case WISECONFIGDIR is not set
Patch2:         add_WISECONFIGDIR_default.patch
BuildRequires:  fdupes
BuildRequires:  gcc
BuildRequires:  glib2-devel
BuildRequires:  make

%description
Wise2 is a package focused on comparisons of bio polymers, commonly DNA 
sequence and protein sequence.

%prep
%autosetup -n wise%{version} -p1
# glib2 compat
find . -type f -iname makefile -print -exec \
    sed -i -e 's#glib-config --cflags#pkg-config --cflags glib-2.0#g' \
           -e 's#glib-config --libs#pkg-config --libs glib-2.0#g' \
           -e 's#-ldyna_glib#-ldyna_glib `pkg-config --libs glib-2.0` #' '{}' \;
# replace non-standard isnumber with Posix/C99 isdigit
sed -i -e 's/isnumber/isdigit/' src/models/phasemodel.c

#remove exec permission
chmod -x test_data/rrm.HMM 

%build
export CFLAGS="$RPM_OPT_FLAGS"
export CXXFLAGS="$RPM_OPT_FLAGS"
cd src
%make_build all

%install
install -m 755 -D -t %{buildroot}/%{_bindir}/ src/bin/*

mkdir -p %{buildroot}/%{_datadir}/%{name}
cp -r test_data wisecfg %{buildroot}/%{_datadir}/%{name}/

%fdupes %{buildroot}%{_datadir}

%files
%{_bindir}/*
%doc docs README
%license LICENSE
%{_datadir}/%{name}

%changelog