Revisions of dolfin
Dirk Stoecker (dstoecker)
accepted
request 1124198
from
Nicolas Morey (NMorey)
(revision 27)
- Drop support for removed openmpi[12] - Move to openmpi4 - Prepare support for openmpi5
Stefan Brüns (StefanBruens)
accepted
request 1102904
from
Stefan Brüns (StefanBruens)
(revision 26)
- Fix build with GCC >= 13, add 0001-Use-correct-type-for-index_to_position-value-tempora.patch
Stefan Brüns (StefanBruens)
accepted
request 1003402
from
Stefan Brüns (StefanBruens)
(revision 25)
- Fix build with HDF5 1.12, use HDF5 1.10 API
Stefan Brüns (StefanBruens)
committed
(revision 24)
Stefan Brüns (StefanBruens)
committed
(revision 23)
Stefan Brüns (StefanBruens)
committed
(revision 22)
Stefan Brüns (StefanBruens)
committed
(revision 21)
Stefan Brüns (StefanBruens)
accepted
request 841967
from
Stefan Brüns (StefanBruens)
(revision 20)
- Update to version 2019.1.0.post0, no changelog provided - Fix build with Boost 1.74, add * 0001-Add-missing-algorithm-include-for-std-min_element-co.patch * 0001-Use-__BYTE_ORDER__-instead-of-removed-Boost-endian.h.patch
Stefan Brüns (StefanBruens)
accepted
request 772422
from
Stefan Brüns (StefanBruens)
(revision 19)
- Update to version 2019.1.0 * Support for shape calculus operations, see file: python/test/unit/fem/test_coordinatederivative.py * Support for PETSc and SLEPc 3.10. * Documented Python elastodynamics demo. * Various bug fixes, e.g. memory leaks, build issues. * Enhancements and additions to pybind11-based Python interface. - Update to version 2018.1.0 * Remove python2 support. * Remove SWIG (now use pybind11 for wrapping C++) * Rename mpi_comm_world() to MPI.comm_world. * Removed from fenics import *, use from dolfin import * * Rename ERROR, CRITICAL etc. to LogLevel.ERROR, LogLevel.CRITICAL. - Update to version 2017.2.0 * Remove UnitQuadMesh and UnitHexMesh. Now use UnitSquareMesh and UnitCubeMesh with cell type qualifiers. * Remove MeshEditor::open without cell type. Now you must explicitly specify CellType when opening a Mesh with MeshEditor. * Rename Mesh::size_global to Mesh::num_entities_global. * Remove Mesh::size. Use Mesh::num_entities instead. * Improved mesh topology computation performance. * Remove excessive calls to MPI init. It may now be necessary in some cases to explicitly intialise MPI. * Improvements to sparsity pattern computation. * Addition of some interfaces using Eigen::Map/ref in addition to dolfin::Array(View). ``dolfin::Array(View)``interfaces will be removed in favour of Eigen interfaces in the next release. * Update pkg-config (dolfin.pc) file. * CMake modernisations, with more use of exported targets. * Add experimental pybind11 generated Python interface. Will replace the SWIG generated interface in the 2018.1 release. * Remove redundant SLEPc interfaces. Fixes issue #908. * Bump required Boost version to 1.55. * Remove PETScUserPreconditioner (was unused and untested). * Remove VTK plotting backend. Plotting is no longer available from the C++ interface. Basic plotting is available using matplotlib and x3dom backends via the plot() free function in the Python interface. Users are advised to move to e.g. Paraview for more demanding plotting needs. * Updates for ufc::finite_element::evaluate_vertex_values interface change. * Add new methods XDMFFile::write_checkpoint, XDMFFile::read_checkpoint to write and read (checkpoint) functions. * Implement marking vertex and edge mesh functions by SubDomain::mark() using on_boundary flag. * Fix quadratic scaling in PETSc matrix allocation with global dofs; assembly with Real space now exhibits linear scaling in number of dofs. * Add assembly for quadrilateral and hexahedral meshes with CG and DG elements. * Updates for some demos and tests to show usage of quadrilateral and hexahedral meshes. * Deprecate CellSize (equivalent to 2*Circumradius) in favour of new CellDiameter; add MinCellEdgeLength and MaxCellEdgeLength * Deprecate subclassing of Expression in Python; new Python class UserExpression introduced for user overloads * Deprecate VertexFunction, EdgeFunction, FaceFunction, FacetFunction, CellFunction; use MeshFunction instead - Update to version 2017.1.0 * Refactor PETScLUSolver to use functionality from PETScKrylovSolver. Simplify interface for solving transposed systems. Fixes #815. * Switch default Python version to Python 3. Use -DDOLFIN_USE_PYTHON3=off to build with Python 2. * Remove redundant solve_transpose functions (use solve with bool argument instead) * Remove OpenMpAsssmebler * Remove MPI communicator as argument in GenericVector::init functions (communicator should be passed via constructor) * Remove Function::operator[+-*/] to prevent memory corruption problems (does not affect Python interface) * Fix XDMF3 output of time series. The default output method is now to assume that all functions have different meshes, and that the meshes change from time step to time step. Two parameters control the output, one limits each function to only one mesh for the whole time series, turn off the default on parameter rewrite_function_mesh to enable this. You can also make all functions share the same mesh and time series, which currently is better supported in Paraview than the alternative, turn on functions_share_mesh for this. These two parameters can also be combined in case all functions share the same mesh at all time steps. This creates minimal size files. * Add PETScSNESSolver and PETScTAOSolver constructor accepting both communicator and type * Expression("f[0]*f[1]", f=obj) notation now supported for non-scalar GenericFunction obj * Expression("f", f=obj) notation now supports obj of MeshFunction types (only cell based) * Fix MPI deadlock in case of instant compilation failure * Allow using Timer as context manager and add timed decorator to measure timings of functions and methods * Add NonlinearProblem::J_pc and support preconditioning matrix in NewtonSolver, PETScSNESSolver and PETScTAOSolver - Remove obsolete patches * dolfin-1.1.0-suitesparse.patch * python3-fixes.patch * cmake-check-boostversion-163.patch - Add 0001-Fix-linker-error-due-to-missing-lpthread.patch - Removed unused build dependencies: VTK, Qt5, X11, Java
Stefan Brüns (StefanBruens)
accepted
request 690466
from
Stefan Brüns (StefanBruens)
(revision 18)
- Convert to _multibuild, sort BuildRequires - Correctly specify PETSC_DIR/SLEPC_DIR using environment variables - Use split Boost BuildRequires - Cleanup BuildRequires, remove obsoleted packages - Changed cmake-check-boostversion-163.patch to allow newer Boost versions
Kshitij Kulshreshtha (polyconvex)
accepted
request 492805
from
Kshitij Kulshreshtha (polyconvex)
(revision 17)
- build using vtk-compat_gl-devel because not all systems have brand new graphics supporting OpenGL version 3.2 - more fixes for running scripts with python3 - require cmake >= 3.5 as reported by the CMakeLists.txt
Dmitry Roshchin (Dmitry_R)
accepted
request 478988
from
Kshitij Kulshreshtha (polyconvex)
(revision 16)
This is an update to current release of the dolfin package as well as a migration from python2 to python3. Please create a link to the devel:building/cmake package in the science repository before accepting this request, as newer version of cmake is required by the current code of dolfin. Please also accept the requests for the following prerequisites - python3-ufl - python3-instant - python3-FIAT - python3-dijitso - python3-FFC these packages are not generic python3 packages, but integral part of the same project as dolfin itself. (https://fenics-project.org/) - Update to upstream release 2016.2.0 [2016-11-30] * Updates to XDMFFile interface, now fully supporting MeshFunction and MeshValueCollection with multiple named datasets in one file (useful for volume/boundary markers). Time series now only when a time is explicitly specified for each step. Full support for ASCII/XML XDMF. * Improved X3DOM support * Improved detection of UFC * Add CMake option `-DDOLFIN_USE_PYTHON3` to create a Python 3 build * Require CMake version 3.5 or higher * Add pylit to generate demo doc from rst * More careful checks of Dirichlet BC function spaces * Change definition of FunctionSpace::component() * Adaptive solving now works for tensor-valued unknowns * Improve logging of PETSc errors; details logged at level TRACE release 2016.1.0 [2016-06-23] * Remove support for 'uint'-valued MeshFunction (replaced by 'size_t') * Major performance improvements and simplifications of the XDMF IO. * Remove Zoltan graph partitioning interface * Add new algorithm for computing mesh entiites. Typical speed-up of two with gcc and four with clang. Reduced memory usage for meshes with irregularly numbered cells. * Remove STLMatrix, STLVector, MUMPSLUSolver and PastixLUSolver classes * Remove PETScPreconditioner::set_near_nullspace and add PETScMatrix::set_near_nullspace * Build system updates for VTK 7.0 * Remove XDMF from File interface. XDMF is XML based, and has many possibilities for file access, which are not accessible through the limited File interface and "<<" ">>" operators. Instead of File, use XDMFFile, and use XDMFFile.read() and XDMFFile.write() for
Kshitij Kulshreshtha (polyconvex)
committed
(revision 15)
- removed unneeded patch cmake-swig-output.patch (fixed upstream) - fix build on Tumbleweed by disabling QT4 vtk on Tumbleweed uses QT5 so we can't build with QT4 too
Kshitij Kulshreshtha (polyconvex)
committed
(revision 14)
- add build dependency on arpack-ng/parpack and trlan as SLEPc requires them in SLEPcConfig.cmake
Kshitij Kulshreshtha (polyconvex)
accepted
request 333804
from
Kshitij Kulshreshtha (polyconvex)
(revision 13)
- remove deprecated Requires: python(abi) == %{py_ver} - update version to 1.6.0 [2015-07-28] * Remove redundant pressure boundary condition in Stokes demos * Require Point in RectangleMesh and BoxMesh constructors * Remove BinaryFile (TimeSeries now requires HDF5) * Add (highly experimental) support for Tpetra matrices and vectors from Trilinos, interfacing to Belos, Amesos2, IfPack2 and Muelu. * Enable (highly experimental) support for Quadrilateral and Hexahedral meshes, including some I/O, but no assembly yet. * Enable UMFPACK and CHOLMOD solvers with Eigen backend * Add an MPI_Comm to logger, currently defaulted to MPI_COMM_WORLD allowing better control over output in parallel * Experimental output of quadratic geometry in XDMF files, allows more exact visualisation of P2 Functions * Remove GenericMatrix::compressed (see Issue #61) * Deprecate and PETScKryloveSolver::set_nullspace() and add PETScMatrix::set_nullspace() * Remove uBLAS backend * Remove UmfpackLUSolver and CholmodSolver * Add EigenMatrix/Vector::data() * Remove GenericMatrix/Vector::data() and GenericMatrix/Vector::data() (to use backends that support data(), cast first to backend type, e.g. A = A.as_backend_type() * Remove cmake.local, replaced by fenics-install-component.sh * Make interior facet integrals define - and + cells ordered by cell_domains value. * Remove deprecated arguments *_domains from assemble() and Form(). * Change measure definition notation from dx[mesh_function] to dx(subdomain_data=mesh_function).
Kshitij Kulshreshtha (polyconvex)
committed
(revision 12)
- Finally the correct patch after all * added cmake-swig-output.patch for openSUSE > 13.2 (boo#874885) * removed cmake-prevent-double-underscore.patch
Kshitij Kulshreshtha (polyconvex)
committed
(revision 11)
- refresh cmake-prevent-double-underscore.patch with better logic
Kshitij Kulshreshtha (polyconvex)
committed
(revision 10)
Kshitij Kulshreshtha (polyconvex)
committed
(revision 9)
- add a patch to make sure the python modules don't have an extra _ in their names with cmake 3.1.1, which makes them fail to load
Kshitij Kulshreshtha (polyconvex)
committed
(revision 8)
- Change dependency from python-ScientificPython to python-sympy
Displaying revisions 1 - 20 of 27