BEDtools: A powerful toolset for genome arithmetic

Edit Package bedtools

Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.

While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line.

  • Download package
  • osc -A checkout science/bedtools && cd $_
  • Create Badge
Source Files
Filename Size Changed
bedtools-2.30.0.tar.gz 0020648577 19.7 MB
bedtools.changes 0000006521 6.37 KB
bedtools.spec 0000003275 3.2 KB
Comments 0
openSUSE Build Service is sponsored by