BEDtools: A powerful toolset for genome arithmetic
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line.
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Filename | Size | Changed |
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bedtools-2.31.1.tar.gz | 0019629373 18.7 MB | |
bedtools.changes | 0000006881 6.72 KB | |
bedtools.spec | 0000003252 3.18 KB |
Latest Revision
Atri Bhattacharya (badshah400)
accepted
request 1137140
from
Stefan Brüns (StefanBruens)
(revision 7)
- Update to 2.31.1 * Added new summary tool for basic sanity checks and quality control of interval files. * Added support for gzipp'ed FASTA files to getfasta and nuc. * Various typo and minor bug fixes
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