BEDtools: A powerful toolset for genome arithmetic

Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.

While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line.

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Source Files
Filename Size Changed Actions
bedtools-2.27.1.tar.gz 0020014704 19.1 MB over 1 year
bedtools-rpmlintrc 0000000115 115 Bytes almost 3 years
bedtools.changes 0000002277 2.22 KB about 1 year
bedtools.spec 0000003224 3.15 KB about 1 year
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