Overview
Request 624290 accepted
- Cleaned spec file using spec-cleaner
- Update to 2.27.1
* Fixed a big memory leak and algorithmic flaw in the split option. Thanks to Neil Kindlon!
* Resolved compilation errors on OSX High Sierra. Many thanks to @jonchang!
* Fixed a bug in the shift tool that caused some intervals to exceed the end of the chromosome. Thanks to @wlholtz
* Fixed major bug in groupby that prevented proper functionality.
* Speed improvements to the shuffle tool.
* Bug fixes to the p-value calculation in the fisher tool. Thanks to Brent Pedersen.
* Allow BED headers to start with chrom or chr
* Fixes to the "k-closest" functionality in the closest tool. Thanks to Neil Kindlon.
* Fixes to the output of the freqasc, freqdesc, distinct_sort_num and distinct_sort, and num_desc operations in the groupby tool. Thanks to @ghuls.
* Many minor bug fixes and compilation improvements from Luke Goodsell.
* Added the -fullHeader option to the maskfasta tool. Thanks to @ghuls.
* Many bug fixes and performance improvements from John Marshall.
* Fixed bug in the -N/-f behavior in subtract.
* Full support for .fai files as genome (-g) files.
* Many other minor bug fixes and functionality improvements.
@Dmitry_R, @Mailaender, @MasterPatricko, @StefanBruens, @TheBlackCat, @WernerFink, @adrianSuSE, @badshah400, @cjunghans, @dstoecker, @ealin, @eeich, @jjolly, @kwk, @namtrac, @psmt, @sbrabec, @scorot, @werner2101: review reminder
Please consider adding a brief list of changes when committing version upgrades.
Request History
flyos created request
- Cleaned spec file using spec-cleaner
- Update to 2.27.1
* Fixed a big memory leak and algorithmic flaw in the split option. Thanks to Neil Kindlon!
* Resolved compilation errors on OSX High Sierra. Many thanks to @jonchang!
* Fixed a bug in the shift tool that caused some intervals to exceed the end of the chromosome. Thanks to @wlholtz
* Fixed major bug in groupby that prevented proper functionality.
* Speed improvements to the shuffle tool.
* Bug fixes to the p-value calculation in the fisher tool. Thanks to Brent Pedersen.
* Allow BED headers to start with chrom or chr
* Fixes to the "k-closest" functionality in the closest tool. Thanks to Neil Kindlon.
* Fixes to the output of the freqasc, freqdesc, distinct_sort_num and distinct_sort, and num_desc operations in the groupby tool. Thanks to @ghuls.
* Many minor bug fixes and compilation improvements from Luke Goodsell.
* Added the -fullHeader option to the maskfasta tool. Thanks to @ghuls.
* Many bug fixes and performance improvements from John Marshall.
* Fixed bug in the -N/-f behavior in subtract.
* Full support for .fai files as genome (-g) files.
* Many other minor bug fixes and functionality improvements.
namtrac accepted request
